BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB034B02LP1|AL429851
(888 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1805 126 6e-29
3x_Contig1790 126 6e-29
3x_Contig1213 102 1e-21
>3x_Contig1805
Length = 19369
Score = 126 bits (63), Expect = 6e-29
Identities = 220/271 (81%), Gaps = 1/271 (0%)
Strand = Plus / Plus
Query: 133 ggaacagaaacgaaaagsgcagcaccgcacggcaaagcaaggcagaaagaagcccaggca 192
|||||||||||||||| || |||||||||||| |||||| | |||||| ||||| ||
Sbjct: 17164 ggaacagaaacgaaaatttcatcaccgcacggcatagcaagtaataaagaatcccagtca 17223
Query: 193 gcsaaccaggcgggaagagggagcccagaaacagcaagggcagagggaggggaagggaaa 252
| ||||| | |||||||||||| |||||||| ||| |||| || || |||| ||||
Sbjct: 17224 tctaaccattctggaagagggagctcagaaacatcaatggcatagttagtggaattgaaa 17283
Query: 253 caaacggaaggggaaggggaaaccagagcgaaggcaagggaggcgacagcgggggaggsg 312
||||| |||| |||| |||||||| | |||| |||| ||| |||||||| ||||
Sbjct: 17284 caaactgaagtggaattggaaaccatatcgaattcaagtgagttgacagcggtggagttt 17343
Query: 313 gcagcaggcagcgga-cggcggcagccggagaaaggagcgaaaaggacaagaaaacsgcc 371
||| ||||||||||| |||| |||||||||||||| |||||||||||||| ||||| ||
Sbjct: 17344 gcatcaggcagcggagcggctgcagccggagaaagtagcgaaaaggacaataaaacttcc 17403
Query: 372 aaagaaaccaagccaagggacagggcggcgg 402
||| ||||||||| || | ||| ||||||||
Sbjct: 17404 aaataaaccaagctaatgtacatggcggcgg 17434
>3x_Contig1790
Length = 27369
Score = 126 bits (63), Expect = 6e-29
Identities = 220/271 (81%), Gaps = 1/271 (0%)
Strand = Plus / Minus
Query: 133 ggaacagaaacgaaaagsgcagcaccgcacggcaaagcaaggcagaaagaagcccaggca 192
|||||||||||||||| || |||||||||||| |||||| | |||||| ||||| ||
Sbjct: 4719 ggaacagaaacgaaaatttcatcaccgcacggcatagcaagtaataaagaatcccagtca 4660
Query: 193 gcsaaccaggcgggaagagggagcccagaaacagcaagggcagagggaggggaagggaaa 252
| ||||| | |||||||||||| |||||||| ||| |||| || || |||| ||||
Sbjct: 4659 tctaaccattctggaagagggagctcagaaacatcaatggcatagttagtggaattgaaa 4600
Query: 253 caaacggaaggggaaggggaaaccagagcgaaggcaagggaggcgacagcgggggaggsg 312
||||| |||| |||| |||||||| | |||| |||| ||| |||||||| ||||
Sbjct: 4599 caaactgaagtggaattggaaaccatatcgaattcaagtgagttgacagcggtggagttt 4540
Query: 313 gcagcaggcagcgga-cggcggcagccggagaaaggagcgaaaaggacaagaaaacsgcc 371
||| ||||||||||| |||| |||||||||||||| |||||||||||||| ||||| ||
Sbjct: 4539 gcatcaggcagcggagcggctgcagccggagaaagtagcgaaaaggacaataaaacttcc 4480
Query: 372 aaagaaaccaagccaagggacagggcggcgg 402
||| ||||||||| || | ||| ||||||||
Sbjct: 4479 aaataaaccaagctaatgtacatggcggcgg 4449
>3x_Contig1213
Length = 3226
Score = 102 bits (51), Expect = 1e-21
Identities = 217/271 (80%), Gaps = 1/271 (0%)
Strand = Plus / Plus
Query: 133 ggaacagaaacgaaaagsgcagcaccgcacggcaaagcaaggcagaaagaagcccaggca 192
|||||||||||||||| || || ||||||||| |||||| | |||||| ||||| ||
Sbjct: 415 ggaacagaaacgaaaatttcatcatcgcacggcatagcaagtaataaagaatcccagtca 474
Query: 193 gcsaaccaggcgggaagagggagcccagaaacagcaagggcagagggaggggaagggaaa 252
| ||||| | |||||||||||| |||||||| ||| || | || || |||| ||||
Sbjct: 475 tctaaccattctggaagagggagctcagaaacatcaatggtatagttagtggaattgaaa 534
Query: 253 caaacggaaggggaaggggaaaccagagcgaaggcaagggaggcgacagcgggggaggsg 312
||||| |||| |||| |||||||| | | || |||| ||| |||||||| ||||
Sbjct: 535 caaactgaagtggaattggaaaccatatccaattcaagtgagttgacagcggtggagttt 594
Query: 313 gcagcaggcagcgga-cggcggcagccggagaaaggagcgaaaaggacaagaaaacsgcc 371
||| ||||||||||| |||| |||||||||||||| |||||||||||||| ||||| ||
Sbjct: 595 gcatcaggcagcggagcggctgcagccggagaaagtagcgaaaaggacaataaaacttcc 654
Query: 372 aaagaaaccaagccaagggacagggcggcgg 402
||| ||||||||| || | ||| ||||||||
Sbjct: 655 aaataaaccaagctaatgtacatggcggcgg 685
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2648
Number of Sequences: 1807
Number of extensions: 2648
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 3
length of query: 888
length of database: 10,358,551
effective HSP length: 16
effective length of query: 872
effective length of database: 10,329,639
effective search space: 9007445208
effective search space used: 9007445208
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.1 bits)
S1: 12 (24.5 bits)
S2: 50 (100.7 bits)